Collections

Biology from Molecules to Embryos, Interactive Animated Lessons

Visualizing kinetic processes can be an impediment to student mastery of basic science coursework. To remedy this obstacle, I created an educational program called Biology from Molecules to Embryos© (BioME), which provides 28 animated lessons for genetics and embryology. To provide access to the international educational community, BioME has been posted as an interactive, open access website. Empirical data demonstrates that BioME is an efficacious educational resource, which elicits positive student perception of its utility. The animated lessons are useful for student self-study. For instructors who choose to display BioME lessons as visual aids for their presentations, explanatory text can be hidden so that it does not compete with the instructors’ verbal explanations. For instructors who would not choose to use premade lessons, downloadable excerpts are provided. These excerpts are short presentations of specific topics that can be incorporated at any point of a lesson according to the instructor’s preference and student needs. To provide opportunities for self-quizzing and to summarize key points, multiple PopUp files are provided for most lessons. To allow students to actively access their mastery of the material and to take advantage of the testing effect, multiple-choice practice questions are also provided with each lesson. The level of these questions ranges from first-order recall to third-order application. The higher order questions promote deep processing by requiring students to deduce answers by actively integrating material within and across lessons. Thus, BioME can help to advance the understanding of biological sciences and promote the usage of animations to present dynamic processes.

Primary Image: BioME Animations. Sequential images of ovulation represent the dynamic progressions of BioME animations.

0 comments 1 reposts

Profile picture of Gillian Schultz

Gillian Schultz onto Bio 14 - Human Bio

Tips for Inclusive Teaching in a Clinical Environment

Tips for inclusive teaching in a clinical environment

0 comments 0 reposts

Profile picture of Heather Rissler

Heather Rissler onto Justice and DEI: Medicine

Excess Mortality and Years of Potential Life Lost Among the Black Population in the US, 1999-2020

JAMA Article

0 comments 0 reposts

Profile picture of Heather Rissler

Heather Rissler onto Justice and DEI: Medicine

Assessing the Risk of Invasive Species Using Community Science Data

This module introduces students who are already familiar with GIS to doing comparative analyses with large-scale community science (often called citizen science) data sets. Students will explore how we can use community science data to examine the spread and distribution of invasive species in different geographic locations. In the final step, students will identify different invasive species and determine if community science data accurately maps the threat these species pose.

0 comments 3 reposts

Profile picture of Jessica Allen

Jessica Allen onto consbio

Data management and introduction to QGIS and RStudio for spatial analysis

Students learn about the importance of good data management and begin to explore QGIS and RStudio for spatial analysis purposes. Students will explore National Land Cover Database raster data and made-up vector point data on both platforms.

0 comments 1 reposts

Profile picture of Jessica Allen

Jessica Allen onto consbio

Exploring Connections between Low Albedo, Urban Heat Islands and Social Justice

This exercise explores circumstances of urban heat islands in the United States using spatial data, including an exploration of heat island solutions.

0 comments 3 reposts

Profile picture of Jessica Allen

Jessica Allen onto cornerstone

Human Evolution for Secondary and College Students

This module is made up of four concepts. The goal of the first concept is to elicit an understanding of primate relatedness, phylogeny, and how specific characteristics are beneficial for life in an arboreal environment. The next concept explains the overarching trends in hominin evolution and the selective pressures that encouraged their development. Concept three examines specific fossils and the characteristics that are associated with them. This concept serves to provide a timeline of hominin evolution. The final concept encourages students to understand characteristics in the hominin lineage and how they relate to social behaviors. This concept ends by driving home the point that evolution is a dynamic and continual process.

0 comments 2 reposts

Profile picture of Alix Matthews

Alix Matthews onto Evolution

Resources from NABT 23 DEI Networking Session - Shared Google folder

Seven projects! 

 

 

0 comments 0 reposts

Profile picture of Sarah Prescott

Sarah Prescott onto BQ IDEAS Resources Collection

Genomics Education Partnership DEI Resources

0 comments 0 reposts

Profile picture of Sarah Prescott

Sarah Prescott onto BQ IDEAS Resources Collection

Louse and Human Coevolution

This module examines the complicated co-evolution of Lice, Humans, and Great Apes

0 comments 2 reposts

Profile picture of Alix Matthews

Alix Matthews onto Evolution

Building Organizational Capacity for Social Justice: Framework, Approach, and Tools

Author: Asian Americans / Pacific Islanders in Philanthropy National Gender and Equity Campaign

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

Racial Equity Tools

Produced by: Center for Assesment and Policy Development, MP Associates, and World Trust

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

Anti-racist Discussion Pedagogy Guide

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

The Neuroethics Blog

from the Emory University Center for Ethics

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

How Can Professors Bring Anti-Racist Pedagogy Practices Into the Classroom?

Author: Sara Weissman

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

Lumina is setting aside $15 million over the next three years to help eradicate systemic racism

author:  Danette Howard

0 comments 1 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto SJEDI Additional Resources

External Collaboration Results in Student Learning Gains and Positive STEM Attitudes in CUREs

Callahan, K. P., Peterson, C. N., Martinez-Vaz, B. M., Huisinga, K. L., Galport, N., Koletar, C., ... & Bell, E. (2022). External Collaboration Results in Student Learning Gains and Positive STEM Attitudes in CUREs. CBE—Life Sciences Education21(4), ar74. 10.1187/cbe.21-06-0167

Abstract

The  implementation  of  course-based  undergraduate  research  experiences  (CUREs)  has  made it possible to expose large undergraduate populations to research experiences. For these research experiences to be authentic, they should reflect the increasingly collaborative  nature  of  research.  While  some  CUREs  have  expanded,  involving  multiple  schools  across  the  nation,  it  is  still  unclear  how  a  structured  extramural  collaboration  between  students  and  faculty  from  an  outside  institution  affects  student  outcomes.  In  this  study,  we established three cohorts of students: 1) no-CURE, 2) single-institution CURE (CURE), and  3)  external  collaborative  CURE  (ec-CURE),  and  assessed  academic  and  attitudinal  outcomes.  ...

0 comments 0 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto Published papers

Length of course-based undergraduate research experiences (CURE) impacts student learning and attitudinal outcomes: A study of the Malate dehydrogenase CUREs Community (MCC)

DeChenne-Peters SE, Rakus JF, Parente AD, Mans TL, Eddy R, Galport N, et al. (2023) Length of course-based undergraduate research experiences (CURE) impacts student learning and attitudinal outcomes: A study of the Malate dehydrogenase CUREs Community (MCC). PLoS ONE 18(3): e0282170. 10.1371/ journal.pone.0282170

Abstract

Course-based undergraduate research experiences (CUREs) are laboratory courses that integrate broadly relevant problems, discovery, use of the scientific process, collaboration, and iteration to provide more students with research experiences than is possible in individually mentored faculty laboratories. Members of the national Malate dehydrogenase CUREs Community (MCC) investigated the differences in student impacts between traditional laboratory courses (control), a short module CURE within traditional laboratory courses (mCURE), and CUREs lasting the entire course (cCURE). ...

0 comments 0 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto Published papers

Using Bioinformatics and Molecular Visualization to Develop Student Hypotheses in a Malate Dehydrogenase Oriented CURE

Callahan KP, Mans T, Zhang J, Bell E, Bell J. 2021. Using bioinformatics and molecular visualization to develop student hypotheses in a malate dehydrogenase oriented CURE. CourseSource. 10.24918/cs.2021.43

Abstract

Developing student creativity and ability to develop a testable hypothesis represents a significant challenge in most laboratory courses. This lesson demonstrates how students use facets of molecular evolution and bioinformatics approaches involving protein sequence alignments (Clustal Omega, Uniprot) and 3D structure visualization (Pymol, JMol, Chimera), along with an analysis of pertinent background literature, to construct a novel hypothesis and develop a research proposal to explore their hypothesis. ...

0 comments 0 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto Published papers

Teaching virtual protein‐centric CUREs and UREs using computational tools

Bell, A., Christian, L., Hecht, D., Huisinga, K., Rakus, J., & Bell, E. (2020). Teaching virtual protein‐centric CUREs and UREs using computational tools. Biochemistry and Molecular Biology Education, 48(6), 646-647. DOI: 10.1002/bmb.21454

Abstract

Readily available, free, computational approaches, adaptable for topics accessi- ble for first to senior year classes and individual research projects, emphasizing contributions of noncovalent interactions to structure, binding and catalysis were used to teach Course-based Undergraduate Research Experiences that fulfill generally accepted main CURE components: Scientific Background, Hypothesis Development, Proposal, Experiments, Teamwork, Data Analysis of quantitative data, Conclusions, and Presentation.

0 comments 0 reposts

Profile picture of Sam S Donovan

Sam S Donovan onto Published papers

Using Yeast to Make Scientists: A Six-Week Student-Driven Research Project for the Cell Biology Laboratory

Traditionally-trained undergraduate students often lack an understanding of science as an active process that yields the information presented in their textbooks. One result has been a call for more research experiences built into traditional introductory undergraduate courses, now commonly referred to as course-based undergraduate research experiences (CUREs). The laboratory module presented in this paper used an established four-step pedagogical framework to simplify and streamline the development and implementation process of a CURE in an introductory biology laboratory setting. A unique six-week CURE was designed for undergraduates enrolled in a cell biology lab that employs Saccharomyces cerevisiae as a eukaryotic model organism. Students address a research problem that is of interest to the scientific community: Do select chemicals in the environment have adverse effects on the mitotic cell division? Students are first introduced to S. cerevisiae, its life cycle, morphology, growth curve generation and analysis, and the laboratory techniques required to cultivate this organism. Working in groups, students then act as scientists to research primary literature, ask an original question, develop a testable hypothesis, collaborate with peers, design and conduct an experiment, analyze and interpret data, and present their work to their peers. In addition, students are involved in multiple levels of iterative work, including addressing problems or inconsistencies, ruling out alternative explanations, and/or gathering additional data to support assertions.

0 comments 3 reposts

Profile picture of Carolyn Wetzel

Carolyn Wetzel onto Cell Bio BIO242

Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes

Research experiences provide a valuable view into the world of science and a great way to explore new fields and careers while developing critical thinking skills. The development and maintenance of databases have allowed researchers to accelerate research in many fields, and understanding how to use them opens doors to actual data for scientific purposes. This resource will give students the opportunity to use research tools with published data to answer questions about immunological topics. The activities in this lesson can be used in Biology, Biotechnology, Microbiology, Bioinformatics, and Introductory Immunology courses. In addition, this activity includes a Student Activity and Instructor Notes with solutions and extra guidance for educators.

0 comments 1 reposts

Profile picture of Chelsea Lloyd

Chelsea Lloyd onto IEDB

Pesticides in My Smoothie Bowl?

Teaching resources, especially active learning pedagogy, are scarce for toxicology compared to what is available for other disciplines. Ecological and human health risk assessment are important aspects of toxicology and are routinely used by government agencies to regulate the registration and usage of many chemicals. Most traditional toxicology classes do not cover how such risk assessments are carried out in real-world scenarios. We developed this case study to introduce concepts and processes of ecological and human health risk assessment in pesticide registration by the U.S. EPA. In Part 1, dialogues among three college friends introduce organic food, pesticides, and the concept of risk. Part 2 and Part 3 build on Part 1 and focus on ecological risk assessment and human health risk assessment, respectively. At the end of each section, students select appropriate exposure and toxicity endpoints to perform a mini-risk assessment and draw conclusions regarding risk. In Part 4, students examine real pesticide monitoring data in various foods and perform basic data organization and analysis. This case is appropriate for upper-level college students taking toxicology or other environmental science related courses. With modifications, the case study may also be suitable for introductory level environmental and biological science students.

Primary image: Assortment of fruit. This image shows some common fruit and fruit drinks.

0 comments 3 reposts

Profile picture of Sonya Crider

Sonya Crider onto Toxicology